<div dir="ltr"><div><div><div><div><div>Hi Everyone,<br><br></div>I figured it out. In case someone else runs into this problem; the issue is that the cufflinks configure script was not properly linking to the boost libraries. After running<br></div>apt-get install libboost-all-dev<br></div>to be sure I was up to date. Then I had to manually link the libraries<br>./configure LIBS="-lboost_system -lboost_thread -lboost_serialization"<br></div>That allowed the make to complete without error. I ran the test dataset and it completed properly.<br><br></div>Thanks for your help Steven, you pointed me towards library issues which led me to fix this. I owe you one!<br><div><br></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div>Seth Munholland, B.Sc.<br></div><div>Department of Biological Sciences<br> Rm. 304 Biology Building<br> University of Windsor<br> 401 Sunset Ave. N9B 3P4<br> T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div></div></div></div> <br><div class="gmail_quote">On Thu, Aug 13, 2015 at 1:55 PM, Seth Munholland <span dir="ltr"><<a href="mailto:munholl@uwindsor.ca" target="_blank">munholl@uwindsor.ca</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>Hi Steven,<br><br></div>If I run:<br> bjam --prefix=/genome/Apps/boost_1_53_0/install/ --with-system stage install<br></div>I get no errors. So is there any way I can get a copy of boost installed that is statically linked? The program I need boost for (cufflinks) requires them to be static.<br></div><div class="gmail_extra"><span class=""><br clear="all"><div><div><div dir="ltr"><div>Seth Munholland, B.Sc.<br></div><div>Department of Biological Sciences<br> Rm. 304 Biology Building<br> University of Windsor<br> 401 Sunset Ave. N9B 3P4<br> T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div></div></div></div> <br></span><div><div class="h5"><div class="gmail_quote">On Wed, Aug 12, 2015 at 9:30 PM, Steven Watanabe <span dir="ltr"><<a href="mailto:watanabesj@gmail.com" target="_blank">watanabesj@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">AMDG<br> <span><br> On 08/11/2015 11:35 AM, Seth Munholland wrote:<br> ><br> > If this is a duplicate issue, I apologize, I couldn't find anything on<br> > google specifically addressing my issue. I also tried sending it before<br> > properly subscribing to the mailing list, that would be my bad on<br> > duplicating.<br> ><br> > I need to use a program that requires installing the boost libraries<br> > statically linked at runtime. my command is:<br> ><br> > bjam --prefix=/genome/Apps/boost_1_53_0/install --toolset=gcc<br> > architecture=x86 address-model=64 link=static runtime-link=static stage<br> > install<br> ><br> > and the output I get is:<br> ><br> </span>> <snip><br> <span>> /genome/Apps/boost_1_53_0/tools/build/v2/build/virtual-target.jam:1079: in<br> > virtual-target.register-actual-name from module virtual-target<br> > error: Duplicate name of actual target: <pstage/lib>libboost_system.a<br> ><br> <br> </span>Does it work if you use just --with-system?<br> If so then the problem is that some library<br> that depends on Boost.System is forcing<br> runtime-link=shared.<br> <br> In Christ,<br> Steven Watanabe<br> <br> _______________________________________________<br> Unsubscribe & other changes: <a href="http://lists.boost.org/mailman/listinfo.cgi/boost-build" rel="noreferrer" target="_blank">http://lists.boost.org/mailman/listinfo.cgi/boost-build</a><br> </blockquote></div><br></div></div></div> </blockquote></div><br></div>