Hi Everyone,

I figured it out. In case someone else runs into this problem; the issue is that the cufflinks configure script was not properly linking to the boost libraries. After running

apt-get install libboost-all-dev

to be sure I was up to date. Then I had to manually link the libraries
./configure LIBS="-lboost_system -lboost_thread -lboost_serialization"

That allowed the make to complete without error. I ran the test dataset and it completed properly.

Thanks for your help Steven, you pointed me towards library issues which led me to fix this. I owe you one!

Seth Munholland, B.Sc.

Department of Biological Sciences
Rm. 304 Biology Building
University of Windsor
401 Sunset Ave. N9B 3P4
T: (519) 253-3000 Ext: 4755

On Thu, Aug 13, 2015 at 1:55 PM, Seth Munholland <munholl@uwindsor.ca> wrote:

Hi Steven,

If I run:
bjam --prefix=/genome/Apps/boost_1_53_0/install/ --with-system stage install
I get no errors. So is there any way I can get a copy of boost installed that is statically linked? The program I need boost for (cufflinks) requires them to be static.

Seth Munholland, B.Sc.
Department of Biological Sciences
Rm. 304 Biology Building
University of Windsor
401 Sunset Ave. N9B 3P4
T: (519) 253-3000 Ext: 4755

On Wed, Aug 12, 2015 at 9:30 PM, Steven Watanabe <watanabesj@gmail.com> wrote:
AMDG

On 08/11/2015 11:35 AM, Seth Munholland wrote:
>
> If this is a duplicate issue, I apologize, I couldn't find anything on
> google specifically addressing my issue. I also tried sending it before
> properly subscribing to the mailing list, that would be my bad on
> duplicating.
>
> I need to use a program that requires installing the boost libraries
> statically linked at runtime. my command is:
>
> bjam --prefix=/genome/Apps/boost_1_53_0/install --toolset=gcc
> architecture=x86 address-model=64 link=static runtime-link=static stage
> install
>
> and the output I get is:
>
> <snip>
> /genome/Apps/boost_1_53_0/tools/build/v2/build/virtual-target.jam:1079: in
> virtual-target.register-actual-name from module virtual-target
> error: Duplicate name of actual target: <pstage/lib>libboost_system.a
>

Does it work if you use just --with-system?
If so then the problem is that some library
that depends on Boost.System is forcing
runtime-link=shared.

In Christ,
Steven Watanabe

_______________________________________________
Unsubscribe & other changes: http://lists.boost.org/mailman/listinfo.cgi/boost-build