<div dir="ltr"><div><div><div><div><div>Hi Everyone,<br><br></div>I figured it out.  In case someone else runs into this problem; the issue is that the cufflinks configure script was not properly linking to the boost libraries.  After running<br></div>apt-get install libboost-all-dev<br></div>to be sure I was up to date.  Then I had to manually link the libraries<br>./configure LIBS=&quot;-lboost_system -lboost_thread -lboost_serialization&quot;<br></div>That allowed the make to complete without error.  I ran the test dataset and it completed properly.<br><br></div>Thanks for your help Steven, you pointed me towards library issues which led me to fix this.  I owe you one!<br><div><br></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div>Seth Munholland, B.Sc.<br></div><div>Department of Biological Sciences<br>
Rm. 304 Biology Building<br>
University of Windsor<br>
401 Sunset Ave. N9B 3P4<br>
T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div></div></div></div>
<br><div class="gmail_quote">On Thu, Aug 13, 2015 at 1:55 PM, Seth Munholland <span dir="ltr">&lt;<a href="mailto:munholl@uwindsor.ca" target="_blank">munholl@uwindsor.ca</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>Hi Steven,<br><br></div>If I run:<br> bjam --prefix=/genome/Apps/boost_1_53_0/install/ --with-system  stage install<br></div>I get no errors.  So is there any way I can get a copy of boost installed that is statically linked?  The program I need boost for (cufflinks) requires them to be static.<br></div><div class="gmail_extra"><span class=""><br clear="all"><div><div><div dir="ltr"><div>Seth Munholland, B.Sc.<br></div><div>Department of Biological Sciences<br>
Rm. 304 Biology Building<br>
University of Windsor<br>
401 Sunset Ave. N9B 3P4<br>
T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div></div></div></div>
<br></span><div><div class="h5"><div class="gmail_quote">On Wed, Aug 12, 2015 at 9:30 PM, Steven Watanabe <span dir="ltr">&lt;<a href="mailto:watanabesj@gmail.com" target="_blank">watanabesj@gmail.com</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">AMDG<br>
<span><br>
On 08/11/2015 11:35 AM, Seth Munholland wrote:<br>
&gt;<br>
&gt; If this is a duplicate issue, I apologize, I couldn&#39;t find anything on<br>
&gt; google specifically addressing my issue.  I also tried sending it before<br>
&gt; properly subscribing to the mailing list, that would be my bad on<br>
&gt; duplicating.<br>
&gt;<br>
&gt; I need to use a program that requires installing the boost libraries<br>
&gt; statically linked at runtime. my command is:<br>
&gt;<br>
&gt; bjam --prefix=/genome/Apps/boost_1_53_0/install --toolset=gcc<br>
&gt; architecture=x86 address-model=64 link=static runtime-link=static stage<br>
&gt; install<br>
&gt;<br>
&gt; and the output I get is:<br>
&gt;<br>
</span>&gt; &lt;snip&gt;<br>
<span>&gt; /genome/Apps/boost_1_53_0/tools/build/v2/build/virtual-target.jam:1079: in<br>
&gt; virtual-target.register-actual-name from module virtual-target<br>
&gt; error: Duplicate name of actual target: &lt;pstage/lib&gt;libboost_system.a<br>
&gt;<br>
<br>
</span>Does it work if you use just --with-system?<br>
If so then the problem is that some library<br>
that depends on Boost.System is forcing<br>
runtime-link=shared.<br>
<br>
In Christ,<br>
Steven Watanabe<br>
<br>
_______________________________________________<br>
Unsubscribe &amp; other changes: <a href="http://lists.boost.org/mailman/listinfo.cgi/boost-build" rel="noreferrer" target="_blank">http://lists.boost.org/mailman/listinfo.cgi/boost-build</a><br>
</blockquote></div><br></div></div></div>
</blockquote></div><br></div>