I managed to get the compiler options from the two builds. Other than -I
options, there are few differences. None of them directly control structure
packing. The PCL build has -fPIE (and also a matching -fPIC) and
-DBOOST_DISABLE_ASSERTS. Our compile options include -mtune=<arch> (along
with a matching -march), --std=c++11, -Dx86_64, and -g (though both have -O3
as well).
In typing this, it occurs to me the issue may be the --std=c++11. I will
test that ASAP. (I already tested the -DBOOST_DISABLE_ASSERT to no effect).
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